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173 lines
5.4 KiB
173 lines
5.4 KiB
// Copyright 2017 The Chromium OS Authors. All rights reserved.
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// Use of this source code is governed by a BSD-style license that can be
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// found in the LICENSE file.
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#include "bsdiff/suffix_array_index.h"
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#include <limits>
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#include <vector>
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#include <divsufsort.h>
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#include <divsufsort64.h>
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#include "bsdiff/logging.h"
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namespace {
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// libdivsufsort C++ overloaded functions used to allow calling the right
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// implementation based on the pointer size.
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int CallDivSufSort(const uint8_t* text, saidx_t* sa, size_t n) {
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return divsufsort(text, sa, n);
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}
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int CallDivSufSort(const uint8_t* text, saidx64_t* sa, size_t n) {
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return divsufsort64(text, sa, n);
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}
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saidx_t CallSaSearch(const uint8_t* text,
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size_t text_size,
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const uint8_t* pattern,
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size_t pattern_size,
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const saidx_t* sa,
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size_t sa_size,
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saidx_t* left) {
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return sa_search(text, text_size, pattern, pattern_size, sa, sa_size, left);
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}
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saidx64_t CallSaSearch(const uint8_t* text,
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size_t text_size,
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const uint8_t* pattern,
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size_t pattern_size,
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const saidx64_t* sa,
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size_t sa_size,
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saidx64_t* left) {
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return sa_search64(text, text_size, pattern, pattern_size, sa, sa_size, left);
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}
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} // namespace
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namespace bsdiff {
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// The SAIDX template type must be either saidx_t or saidx64_t, which will
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// depend on the maximum size of the input text needed.
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template <typename SAIDX>
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class SuffixArrayIndex : public SuffixArrayIndexInterface {
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public:
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SuffixArrayIndex() = default;
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// Initialize and construct the suffix array of the |text| string of length
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// |n|. The memory pointed by |text| must be kept alive. Returns whether the
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// construction succeeded.
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bool Init(const uint8_t* text, size_t n);
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// SuffixArrayIndexInterface overrides.
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void SearchPrefix(const uint8_t* target,
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size_t length,
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size_t* out_length,
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uint64_t* out_pos) const override;
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private:
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const uint8_t* text_{nullptr}; // Owned by the caller.
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size_t n_{0};
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std::vector<SAIDX> sa_;
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};
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template <typename SAIDX>
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bool SuffixArrayIndex<SAIDX>::Init(const uint8_t* text, size_t n) {
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if (!sa_.empty()) {
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// Already initialized.
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LOG(ERROR) << "SuffixArray already initialized";
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return false;
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}
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if (static_cast<uint64_t>(n) >
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static_cast<uint64_t>(std::numeric_limits<SAIDX>::max())) {
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LOG(ERROR) << "Input too big (" << n << ") for this implementation";
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return false;
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}
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text_ = text;
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n_ = n;
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sa_.resize(n + 1);
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if (n > 0 && CallDivSufSort(text_, sa_.data(), n) != 0) {
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LOG(ERROR) << "divsufsrot() failed";
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return false;
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}
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return true;
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}
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template <typename SAIDX>
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void SuffixArrayIndex<SAIDX>::SearchPrefix(const uint8_t* target,
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size_t length,
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size_t* out_length,
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uint64_t* out_pos) const {
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SAIDX suf_left;
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SAIDX count =
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CallSaSearch(text_, n_, target, length, sa_.data(), n_, &suf_left);
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if (count > 0) {
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// This is the simple case where we found the whole |target| string was
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// found.
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*out_pos = sa_[suf_left];
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*out_length = length;
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return;
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}
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// In this case, |suf_left| points to the first suffix array position such
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// that the suffix at that position is lexicographically larger than |target|.
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// We only need to check whether the previous entry or the current entry is a
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// longer match.
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size_t prev_suffix_len = 0;
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if (suf_left > 0) {
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const size_t prev_max_len =
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std::min(n_ - static_cast<size_t>(sa_[suf_left - 1]), length);
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const uint8_t* prev_suffix = text_ + sa_[suf_left - 1];
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prev_suffix_len =
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std::mismatch(target, target + prev_max_len, prev_suffix).first -
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target;
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}
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size_t next_suffix_len = 0;
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if (static_cast<size_t>(suf_left) < n_) {
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const uint8_t* next_suffix = text_ + sa_[suf_left];
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const size_t next_max_len =
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std::min(n_ - static_cast<size_t>(sa_[suf_left]), length);
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next_suffix_len =
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std::mismatch(target, target + next_max_len, next_suffix).first -
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target;
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}
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*out_length = std::max(next_suffix_len, prev_suffix_len);
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if (!*out_length) {
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*out_pos = 0;
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} else if (next_suffix_len >= prev_suffix_len) {
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*out_pos = sa_[suf_left];
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} else {
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*out_pos = sa_[suf_left - 1];
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}
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}
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std::unique_ptr<SuffixArrayIndexInterface> CreateSuffixArrayIndex(
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const uint8_t* text,
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size_t n) {
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// The maximum supported size when using the suffix array based on the 32-bit
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// saidx_t type. We limit this to something a bit smaller (16 bytes smaller)
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// than the maximum representable number so references like "n + 1" are don't
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// overflow.
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const size_t kMaxSaidxSize = std::numeric_limits<saidx_t>::max() - 16;
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std::unique_ptr<SuffixArrayIndexInterface> ret;
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if (n > kMaxSaidxSize) {
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SuffixArrayIndex<saidx64_t>* sa_ptr = new SuffixArrayIndex<saidx64_t>();
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ret.reset(sa_ptr);
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if (!sa_ptr->Init(text, n))
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return nullptr;
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} else {
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SuffixArrayIndex<saidx_t>* sa_ptr = new SuffixArrayIndex<saidx_t>();
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ret.reset(sa_ptr);
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if (!sa_ptr->Init(text, n))
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return nullptr;
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}
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return ret;
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}
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} // namespace bsdiff
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