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Best practices

"Equals means interchangeable"

Don't use AutoValue to implement value semantics unless you really want value semantics. In particular, you should never care about the difference between two equal instances.

Avoid mutable property types

Avoid mutable types, including arrays, for your properties, especially if you make your accessor methods public. The generated accessors don't copy the field value on its way out, so you'd be exposing your internal state.

Note that this doesn't mean your factory method can't accept mutable types as input parameters. Example:

@AutoValue
public abstract class ListExample {
  abstract ImmutableList<String> names();

  public static ListExample create(List<String> mutableNames) {
    return new AutoValue_ListExample(ImmutableList.copyOf(mutableNames));
  }
}

Keep behavior simple and dependency-free

Your class can (and should) contain simple intrinsic behavior. But it shouldn't require complex dependencies and shouldn't access static state.

You should essentially never need an alternative implementation of your hand-written abstract class, whether hand-written or generated by a mocking framework. If your behavior has enough complexity (or dependencies) that it actually needs to be mocked or faked, split it into a separate type that is not a value type. Otherwise it permits an instance with "real" behavior and one with "mock/fake" behavior to be equals, which does not make sense.

One reference only

Other code in the same package will be able to directly access the generated class, but should not. It's best if each generated class has one and only one reference from your source code: the call from your static factory method to the generated constructor. If you have multiple factory methods, have them all delegate to the same hand-written method, so there is still only one point of contact with the generated code. This way, you have only one place to insert precondition checks or other pre- or postprocessing.

Mark all concrete methods final

Consider that other developers will try to read and understand your value class while looking only at your hand-written class, not the actual (generated) implementation class. If you mark your concrete methods final, they won't have to wonder whether the generated subclass might be overriding them. This is especially helpful if you are underriding equals, hashCode or toString!

Maybe add an explicit, inaccessible constructor

There are a few small advantages to adding a package-private, parameterless constructor to your abstract class. It prevents unwanted subclasses, and prevents an undocumented public constructor showing up in your generated API documentation. Whether these benefits are worth the extra noise in the file is a matter of your judgment.