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397 lines
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<h1><a href="genomics_v1.html">Genomics API</a> . <a href="genomics_v1.callsets.html">callsets</a></h1>
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<h2>Instance Methods</h2>
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<p class="toc_element">
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<code><a href="#create">create(body, x__xgafv=None)</a></code></p>
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<p class="firstline">Creates a new call set.</p>
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<p class="toc_element">
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<code><a href="#delete">delete(callSetId, x__xgafv=None)</a></code></p>
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<p class="firstline">Deletes a call set.</p>
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<p class="toc_element">
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<code><a href="#get">get(callSetId, x__xgafv=None)</a></code></p>
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<p class="firstline">Gets a call set by ID.</p>
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<p class="toc_element">
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<code><a href="#patch">patch(callSetId, body, updateMask=None, x__xgafv=None)</a></code></p>
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<p class="firstline">Updates a call set.</p>
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<p class="toc_element">
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<code><a href="#search">search(body, x__xgafv=None)</a></code></p>
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<p class="firstline">Gets a list of call sets matching the criteria.</p>
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<p class="toc_element">
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<code><a href="#search_next">search_next(previous_request, previous_response)</a></code></p>
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<p class="firstline">Retrieves the next page of results.</p>
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<h3>Method Details</h3>
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<div class="method">
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<code class="details" id="create">create(body, x__xgafv=None)</code>
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<pre>Creates a new call set.
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For the definitions of call sets and other genomics resources, see
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[Fundamentals of Google
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Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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Args:
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body: object, The request body. (required)
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The object takes the form of:
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{ # A call set is a collection of variant calls, typically for one sample. It
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# belongs to a variant set.
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#
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# For more genomics resource definitions, see [Fundamentals of Google
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# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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"info": { # A map of additional call set information. This must be of the form
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# map<string, string[]> (string key mapping to a list of string values).
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"a_key": [
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"",
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],
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},
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"name": "A String", # The call set name.
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"created": "A String", # The date this call set was created in milliseconds from the epoch.
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"sampleId": "A String", # The sample ID this call set corresponds to.
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"variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
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# have exactly length one, as a call set belongs to a single variant set.
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# This field is repeated for compatibility with the
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# [GA4GH 0.5.1
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# API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
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"A String",
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],
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"id": "A String", # The server-generated call set ID, unique across all call sets.
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}
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x__xgafv: string, V1 error format.
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Allowed values
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1 - v1 error format
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2 - v2 error format
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Returns:
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An object of the form:
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{ # A call set is a collection of variant calls, typically for one sample. It
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# belongs to a variant set.
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#
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# For more genomics resource definitions, see [Fundamentals of Google
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# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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"info": { # A map of additional call set information. This must be of the form
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# map<string, string[]> (string key mapping to a list of string values).
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"a_key": [
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"",
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],
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},
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"name": "A String", # The call set name.
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"created": "A String", # The date this call set was created in milliseconds from the epoch.
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"sampleId": "A String", # The sample ID this call set corresponds to.
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"variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
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# have exactly length one, as a call set belongs to a single variant set.
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# This field is repeated for compatibility with the
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# [GA4GH 0.5.1
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# API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
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"A String",
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],
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"id": "A String", # The server-generated call set ID, unique across all call sets.
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}</pre>
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</div>
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<div class="method">
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<code class="details" id="delete">delete(callSetId, x__xgafv=None)</code>
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<pre>Deletes a call set.
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For the definitions of call sets and other genomics resources, see
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[Fundamentals of Google
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Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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Args:
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callSetId: string, The ID of the call set to be deleted. (required)
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x__xgafv: string, V1 error format.
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Allowed values
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1 - v1 error format
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2 - v2 error format
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Returns:
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An object of the form:
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{ # A generic empty message that you can re-use to avoid defining duplicated
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# empty messages in your APIs. A typical example is to use it as the request
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# or the response type of an API method. For instance:
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#
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# service Foo {
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# rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty);
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# }
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#
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# The JSON representation for `Empty` is empty JSON object `{}`.
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}</pre>
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</div>
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<div class="method">
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<code class="details" id="get">get(callSetId, x__xgafv=None)</code>
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<pre>Gets a call set by ID.
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For the definitions of call sets and other genomics resources, see
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[Fundamentals of Google
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Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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Args:
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callSetId: string, The ID of the call set. (required)
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x__xgafv: string, V1 error format.
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Allowed values
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1 - v1 error format
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2 - v2 error format
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Returns:
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An object of the form:
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{ # A call set is a collection of variant calls, typically for one sample. It
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# belongs to a variant set.
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#
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# For more genomics resource definitions, see [Fundamentals of Google
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# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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"info": { # A map of additional call set information. This must be of the form
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# map<string, string[]> (string key mapping to a list of string values).
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"a_key": [
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"",
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],
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},
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"name": "A String", # The call set name.
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"created": "A String", # The date this call set was created in milliseconds from the epoch.
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"sampleId": "A String", # The sample ID this call set corresponds to.
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"variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
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# have exactly length one, as a call set belongs to a single variant set.
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# This field is repeated for compatibility with the
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# [GA4GH 0.5.1
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# API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
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"A String",
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],
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"id": "A String", # The server-generated call set ID, unique across all call sets.
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}</pre>
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</div>
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<div class="method">
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<code class="details" id="patch">patch(callSetId, body, updateMask=None, x__xgafv=None)</code>
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<pre>Updates a call set.
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For the definitions of call sets and other genomics resources, see
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[Fundamentals of Google
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Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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This method supports patch semantics.
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Args:
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callSetId: string, The ID of the call set to be updated. (required)
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body: object, The request body. (required)
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The object takes the form of:
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{ # A call set is a collection of variant calls, typically for one sample. It
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# belongs to a variant set.
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#
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# For more genomics resource definitions, see [Fundamentals of Google
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# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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"info": { # A map of additional call set information. This must be of the form
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# map<string, string[]> (string key mapping to a list of string values).
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"a_key": [
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"",
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],
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},
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"name": "A String", # The call set name.
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"created": "A String", # The date this call set was created in milliseconds from the epoch.
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"sampleId": "A String", # The sample ID this call set corresponds to.
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"variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
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# have exactly length one, as a call set belongs to a single variant set.
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# This field is repeated for compatibility with the
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# [GA4GH 0.5.1
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# API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
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"A String",
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],
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"id": "A String", # The server-generated call set ID, unique across all call sets.
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}
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updateMask: string, An optional mask specifying which fields to update. At this time, the only
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mutable field is name. The only
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acceptable value is "name". If unspecified, all mutable fields will be
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updated.
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x__xgafv: string, V1 error format.
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Allowed values
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1 - v1 error format
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2 - v2 error format
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Returns:
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An object of the form:
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{ # A call set is a collection of variant calls, typically for one sample. It
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# belongs to a variant set.
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#
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# For more genomics resource definitions, see [Fundamentals of Google
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# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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"info": { # A map of additional call set information. This must be of the form
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# map<string, string[]> (string key mapping to a list of string values).
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"a_key": [
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"",
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],
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},
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"name": "A String", # The call set name.
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"created": "A String", # The date this call set was created in milliseconds from the epoch.
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"sampleId": "A String", # The sample ID this call set corresponds to.
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"variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
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# have exactly length one, as a call set belongs to a single variant set.
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# This field is repeated for compatibility with the
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# [GA4GH 0.5.1
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# API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
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"A String",
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],
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"id": "A String", # The server-generated call set ID, unique across all call sets.
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}</pre>
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</div>
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<div class="method">
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<code class="details" id="search">search(body, x__xgafv=None)</code>
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<pre>Gets a list of call sets matching the criteria.
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For the definitions of call sets and other genomics resources, see
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[Fundamentals of Google
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Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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Implements
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[GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
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Args:
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body: object, The request body. (required)
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The object takes the form of:
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{ # The call set search request.
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"pageToken": "A String", # The continuation token, which is used to page through large result sets.
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# To get the next page of results, set this parameter to the value of
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# `nextPageToken` from the previous response.
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"variantSetIds": [ # Restrict the query to call sets within the given variant sets. At least one
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# ID must be provided.
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"A String",
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],
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"name": "A String", # Only return call sets for which a substring of the name matches this
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# string.
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"pageSize": 42, # The maximum number of results to return in a single page. If unspecified,
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# defaults to 1024.
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}
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x__xgafv: string, V1 error format.
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Allowed values
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1 - v1 error format
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2 - v2 error format
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Returns:
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An object of the form:
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{ # The call set search response.
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"nextPageToken": "A String", # The continuation token, which is used to page through large result sets.
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# Provide this value in a subsequent request to return the next page of
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# results. This field will be empty if there aren't any additional results.
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"callSets": [ # The list of matching call sets.
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{ # A call set is a collection of variant calls, typically for one sample. It
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# belongs to a variant set.
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#
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# For more genomics resource definitions, see [Fundamentals of Google
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# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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"info": { # A map of additional call set information. This must be of the form
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# map<string, string[]> (string key mapping to a list of string values).
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"a_key": [
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"",
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],
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},
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"name": "A String", # The call set name.
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"created": "A String", # The date this call set was created in milliseconds from the epoch.
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"sampleId": "A String", # The sample ID this call set corresponds to.
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"variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
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# have exactly length one, as a call set belongs to a single variant set.
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# This field is repeated for compatibility with the
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# [GA4GH 0.5.1
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# API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
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"A String",
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],
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"id": "A String", # The server-generated call set ID, unique across all call sets.
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},
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],
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}</pre>
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</div>
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<div class="method">
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<code class="details" id="search_next">search_next(previous_request, previous_response)</code>
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<pre>Retrieves the next page of results.
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Args:
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previous_request: The request for the previous page. (required)
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previous_response: The response from the request for the previous page. (required)
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Returns:
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A request object that you can call 'execute()' on to request the next
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page. Returns None if there are no more items in the collection.
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</pre>
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</div>
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</body></html> |